PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0022771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 71aa    MW: 8193.27 Da    PI: 6.7668
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0022771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-0737531026
                            GGTS--TTTTT-SS-SS CS
                 zf-CCCH 10 artGtCkyGdrCkFaHg 26
                            ++t tCk+G+ CkF H+
  RcHm_v2.0_Chr5g0022771 37 MQTRTCKFGEGCKFDHP 53
                            89**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MEATNSTNPL AKRHRFENTS LPIYPQRPGE EDSAHCMQTR TCKFGEGCKF DHPIWVPDGG  60
IPYWKEVPIY L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-27C3H family protein