PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 468aa MW: 50937.1 Da PI: 8.3788

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	6.9e-11	112	136	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ RcHm_v2.0_Chr5g0022841 112 APDCPYFLKTQRCKFGLRCKFNHPK 136 589********************96 PP
2	zf-CCCH	31.2	3.7e-10	164	184	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +f+++tG+CkyG++CkF+H++ RcHm_v2.0_Chr5g0022841 164 HFYLKTGQCKYGATCKFNHPK 184 59*****************96 PP
3	zf-CCCH	37.9	2.9e-12	287	311	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ RcHm_v2.0_Chr5g0022841 287 GEADCPFYLKTGSCKYGATCQYNHP 311 6789********************9 PP
4	zf-CCCH	41.5	2.2e-13	367	391	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++++tG+CkyG++C+F+H+ RcHm_v2.0_Chr5g0022841 367 GQAECEYYMKTGECKYGAQCRFHHP 391 789*********************8 PP
5	zf-CCCH	33.3	8.4e-11	428	447	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCkyG++C+F H+p RcHm_v2.0_Chr5g0022841 428 YYLKTGTCKYGATCRFDHPP 447 8*****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MPNPARPASN APLKHSTIRL FWVPIIRLGK WKLGSTNPLA KRPRFENIAY LSTVARSQER 60 KIVPTICKQE PVNLVRGCKF DHPIWVPDGG IPDWKEVPLV APSESLPERP GAPDCPYFLK 120 TQRCKFGLRC KFNHPKDKLA TACASENGDV YALPETPRGL LNLHFYLKTG QCKYGATCKF 180 NHPKDMIPSA TQENKSGETE TDLKTEGSEV AVKPLVGVGI TANTQITLEL SKHDAPLIWR 240 SAIVEGLPAS WAEERLARGS AASWAEESLA VLTGGEESSE EAGCPEGEAD CPFYLKTGSC 300 KYGATCQYNH PDRYDINPPV AAISYPLSAP SVAGFNMGVA NPAAFTNQTL AQPTLGASPT 360 VYPQRFGQAE CEYYMKTGEC KYGAQCRFHH PIDRPAVALS TTKPSQQENV KLTLAGLPRR 420 EGAVIRVYYL KTGTCKYGAT CRFDHPPPGE VVAMAASQAK SDSIGGKA

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MPNPARPASN APLKHSTIRL FWVPIIRLGK WKLGSTNPLA KRPRFENIAY LSTVARSQER  60
KIVPTICKQE PVNLVRGCKF DHPIWVPDGG IPDWKEVPLV APSESLPERP GAPDCPYFLK  120
TQRCKFGLRC KFNHPKDKLA TACASENGDV YALPETPRGL LNLHFYLKTG QCKYGATCKF  180
NHPKDMIPSA TQENKSGETE TDLKTEGSEV AVKPLVGVGI TANTQITLEL SKHDAPLIWR  240
SAIVEGLPAS WAEERLARGS AASWAEESLA VLTGGEESSE EAGCPEGEAD CPFYLKTGSC  300
KYGATCQYNH PDRYDINPPV AAISYPLSAP SVAGFNMGVA NPAAFTNQTL AQPTLGASPT  360
VYPQRFGQAE CEYYMKTGEC KYGAQCRFHH PIDRPAVALS TTKPSQQENV KLTLAGLPRR  420
EGAVIRVYYL KTGTCKYGAT CRFDHPPPGE VVAMAASQAK SDSIGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-122	C3H family protein