PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 497aa MW: 53990 Da PI: 8.0591

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.7	2.3e-09	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ RcHm_v2.0_Chr5g0022861 141 GEKDCVHYMQTRTCKFGEGCKFDHP 165 7889********************8 PP
2	zf-CCCH	33.4	7.4e-11	194	218	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+G rCkF+H++ RcHm_v2.0_Chr5g0022861 194 APDCPYFLKTQRCKFGLRCKFNHPK 218 589********************96 PP
3	zf-CCCH	38.1	2.5e-12	241	265	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG+CkyG++CkF+H++ RcHm_v2.0_Chr5g0022861 241 EPACAFYLKTGQCKYGATCKFNHPK 265 689********************96 PP
4	zf-CCCH	38	2.7e-12	315	340	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ RcHm_v2.0_Chr5g0022861 315 PGEADCPFYLKTGSCKYGATCRYNHP 340 57899********************9 PP
5	zf-CCCH	41.4	2.4e-13	396	420	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C ++++tG+CkyG++C+F+H+ RcHm_v2.0_Chr5g0022861 396 GQAECEYYMKTGECKYGAQCRFHHP 420 789*********************8 PP
6	zf-CCCH	38.6	1.8e-12	453	476	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p RcHm_v2.0_Chr5g0022861 453 VICVYYLKTGTCKYGATCRFDHPP 476 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MASHLFTYGA AQSAPAPTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS TSSMYLAGTD 60 GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNPI GQMEAWYSTN 120 SLAKRPRFEN TSLPIYPQRP GEKDCVHYMQ TRTCKFGEGC KFDHPIWVPD GGIQDWKEVP 180 LVAPSESLPE RPGAPDCPYF LKTQRCKFGL RCKFNHPKDK LATAGASENG DVYALPERPS 240 EPACAFYLKT GQCKYGATCK FNHPKDIQIP SATQENKSGE TETDLKTEGS EVAVKPLVSF 300 TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGATCRYNHP DRYDINPPVA AISYPLSAPS 360 VAGFNIGVAN PAAFTYQTLA QPTVGVSPTV YPQRFGQAEC EYYMKTGECK YGAQCRFHHP 420 IDRPAVALST TKPSQQENVK LTLAGLPRRE GAVICVYYLK TGTCKYGATC RFDHPPPGEV 480 VAMAASQAKS DSTGGKA

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MASHLFTYGA AQSAPAPTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS TSSMYLAGTD  60
GLGAYSDAAR ATSYMMSSWP APDAEPGPPG FKRTSEALYH QALLGAHNPI GQMEAWYSTN  120
SLAKRPRFEN TSLPIYPQRP GEKDCVHYMQ TRTCKFGEGC KFDHPIWVPD GGIQDWKEVP  180
LVAPSESLPE RPGAPDCPYF LKTQRCKFGL RCKFNHPKDK LATAGASENG DVYALPERPS  240
EPACAFYLKT GQCKYGATCK FNHPKDIQIP SATQENKSGE TETDLKTEGS EVAVKPLVSF  300
TPALLYNSKE LPVRPGEADC PFYLKTGSCK YGATCRYNHP DRYDINPPVA AISYPLSAPS  360
VAGFNIGVAN PAAFTYQTLA QPTVGVSPTV YPQRFGQAEC EYYMKTGECK YGAQCRFHHP  420
IDRPAVALST TKPSQQENVK LTLAGLPRRE GAVICVYYLK TGTCKYGATC RFDHPPPGEV  480
VAMAASQAKS DSTGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein