PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0022911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 341aa MW: 37220.1 Da PI: 8.2345

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0022911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.2	3.6e-10	141	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ RcHm_v2.0_Chr5g0022911 141 GEKDCVHYMQTRTCKFGECCKFDHP 165 7889********************8 PP
2	zf-CCCH	30.4	6.7e-10	194	218	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C++f++t Ck+ rCkF+H++ RcHm_v2.0_Chr5g0022911 194 APDCPYFLKTQRCKFVLRCKFNHPK 218 589********************96 PP
3	zf-CCCH	41.6	2.1e-13	241	264	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++++tG+CkyG++C+F+H+ RcHm_v2.0_Chr5g0022911 241 EPACAYYMKTGECKYGAQCRFHHP 264 689********************8 PP
4	zf-CCCH	39.2	1.1e-12	297	320	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p RcHm_v2.0_Chr5g0022911 297 VICVYYLKTGTCKYGATCRFDHPP 320 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MASHLFTYGA SQSAPAPTPA LSTVYTPRSL AQSYLSDPTH RYLSGSDPLS NSSMYLAGTD 60 GLGAYSDAAR ATSYMMSSWP APDAELGPPG FKRTSEALYH QALLGAHNPI GQMEAWYSTN 120 SLAKRPRFEN TSLPIYPQRP GEKDCVHYMQ TRTCKFGECC KFDHPIWVPD GGIQDWKEVP 180 LVAPSESLPE RPGAPDCPYF LKTQRCKFVL RCKFNHPKDK LATAGASENG DVYALPERPS 240 EPACAYYMKT GECKYGAQCR FHHPIDRPAV ALSTTKPSQQ ENVKLTLAGL PRREGAVICV 300 YYLKTGTCKY GATCRFDHPP PGEVVAMAAS QAKSDSTGGK A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-108	C3H family protein