PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0023211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 347aa    MW: 39558.9 Da    PI: 4.8057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0023211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.2e-5561331128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtdeelv +yL +k++g ++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWka
  RcHm_v2.0_Chr5g0023211   6 LPPGFRFHPTDEELVAYYLDRKINGCTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKA 91 
                             79****************************.99**************96435566888***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd++v s ++++vg+kktLv+y+grap+g +t+Wvmheyrl
  RcHm_v2.0_Chr5g0023211  92 TGKDRAVNS-NRRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                             ********9.9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MAPMSLPPGF RFHPTDEELV AYYLDRKING CTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVNS NRRAVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLTDSVCGS PSSSLKDSYA LCRIFKKTIQ IPKNNKEEKT IKNTLLNEKK  180
SREDTSTGIN EGEASRGIET DQDYENYSNP DYSKFLSDTS SSDLTQGTPT ETGIADDLQA  240
PFASDEANSS ANLYSLGAHC SSNNLFQDTY MPSDTSFENY QFPYPPLELE DFPMINLAAE  300
TNTSKPQIID DYMSCDRLKD YMNGTLEEIF SLCSSQDNNH AARPMQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-110NAC family protein