PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0023221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 338aa    MW: 37605.3 Da    PI: 7.0584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0023221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181360148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEd++l++ v+ +G g+W++++++ g+ R++k+c++rw +yl
  RcHm_v2.0_Chr5g0023221 13 RGLWSPEEDDKLIKHVTTHGHGSWSSVPKHAGLERCGKSCRLRWINYL 60
                            788*******************************************97 PP
2Myb_DNA-binding55.91e-1766109146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg++T eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  RcHm_v2.0_Chr5g0023221  66 RGSFTSEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                             89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGHRCCGKHK VKRGLWSPEE DDKLIKHVTT HGHGSWSSVP KHAGLERCGK SCRLRWINYL  60
RPELKRGSFT SEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPQTHNLISS HKRSVASNKI AGSNAKLQSH IDQKRPVFTV NNMSQIIDSS TEINYSISPP  180
IVPFSNAQPP TVQPIMATPI DNQYLVHNPN SGWTSVTDIP TFPDSTQSIT SASSSSAFGH  240
LDGSNCIWAA GADPFEAAPG AMELQGEQSK GQVVQVEQEK EKLLEMEMKA MQDMDIAASF  300
DQSSSFDFSL VEYCSTLMSG VVPHDHVNYS AADFTWNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-88MYB family protein