PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0023371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 370aa MW: 41323.5 Da PI: 8.6172

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0023371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl RcHm_v2.0_Chr5g0023371 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89 79****************************************************8 PP
2	Myb_DNA-binding	72.5	6.5e-23	37	88	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e++e++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ RcHm_v2.0_Chr5g0023371 37 RLRWTVELHERFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 88 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MFQQHKKPSS MNSHESHRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDHASSLD LQRNSASSSG 120 IIGRSMNEMQ MEVQRRLHEQ LEVQKHLQLR IEAQGKYMQS ILEKACQTLA GENNMAAAAG 180 SYKGNIGNNQ GVNHADMGNL KDFNSPLNFQ SFQDLNIYGS GDHLDQLQQN SLDRPPLDHH 240 SFMPNNDNIN CMGSKKRPSP YNSGNSSGKS PLIWSDDLRL QDLGTAASCL GPQDDHQIQI 300 APPSIERGTD QIESISDIYE SKPMIQGDEK KFEAGNKLER PSPRRAPMGS ERMNPMINAG 360 VRQGRNSPFG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MFQQHKKPSS MNSHESHRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SIKDHASSLD LQRNSASSSG  120
IIGRSMNEMQ MEVQRRLHEQ LEVQKHLQLR IEAQGKYMQS ILEKACQTLA GENNMAAAAG  180
SYKGNIGNNQ GVNHADMGNL KDFNSPLNFQ SFQDLNIYGS GDHLDQLQQN SLDRPPLDHH  240
SFMPNNDNIN CMGSKKRPSP YNSGNSSGKS PLIWSDDLRL QDLGTAASCL GPQDDHQIQI  300
APPSIERGTD QIESISDIYE SKPMIQGDEK KFEAGNKLER PSPRRAPMGS ERMNPMINAG  360
VRQGRNSPFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-134	G2-like family protein