PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0023891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23918.7 Da    PI: 4.4547
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0023891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29e-18957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ gk+y +
  RcHm_v2.0_Chr5g0023891  9 KKIDNKAYLKATFSKRRKGLFRKAAELCDMCGAEIAILTVSPGGKFYNF 57
                            689********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MGRRKIEIKK IDNKAYLKAT FSKRRKGLFR KAAELCDMCG AEIAILTVSP GGKFYNFGHP  60
NVDSIIARYC GGETSCILHE NHDCVSHEDD DEDLEGEQEK EEDITDDVDE VEPIHEEEPI  120
HKAGEEKELI DLINREGDGT MRLSIDFSRK FWWNEEEPID PEQREMYIHS LMELRNNVIW  180
VLNDRNRRES YVKDYMGGDI SYDMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175188RNNVIWVLNDRNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26M-type_MADS family protein