PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0024601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 236aa    MW: 27111.7 Da    PI: 4.55
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0024601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-08163206755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++ r RR++i ++ +eL +l+P        K++ ae+L+ A +Y+k Lq
  RcHm_v2.0_Chr5g0024601 163 IAARDRRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKFLQ 206
                             56799*****************95.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MALNWEVPQF FDSDMTCIQQ NLEAELVGDF LQCVNSDYSN PHNFLDPWYD PCNLLNLENP  60
DFDHLLPPFS LKPDMFPVQD FEPYPQPKRQ KCSKEYYCRD LTPTFSNGFA PNPCPRPEFF  120
SGAFTTPVLN FQHPEVVDGN TRKTSVENVG KKVEERSVSP QSIAARDRRR KITEKTQELG  180
KLVPGGSKMN TAEMLTAAYN YVKFLQAQMG ILEFMGSFQG SLMVLINWIM SYEDDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-19bHLH family protein