PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0025741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 210aa    MW: 23790.3 Da    PI: 6.2961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0025741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-084588755
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +ErrRR+++ +++  Lr+l+P       + ++K +i e  + YIk+Lq
  RcHm_v2.0_Chr5g0025741 45 HAERRRRQKLGDRLLILRSLVPII-----TNMTKETIIEDSITYIKELQ 88
                            79*********************6.....58*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MEFVGSALSE LGTTDQQKPG CRGGRMWGRR RHQEDDSSFK SKNLHAERRR RQKLGDRLLI  60
LRSLVPIITN MTKETIIEDS ITYIKELQTN VNILQEQLFK MEASAQEALE LRKDEVDAAE  120
EMKKFGIQIG VDVAQIDGNK LWVKAIIEKK RGGFTKLVEA MTYFGFELTD TNIITSNGAM  180
VVSSVLTGFH CDTLQVEQTR ELILEIVNGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12951RRRHQEDDSSFKSKNLHAERRRR
22953RRRHQEDDSSFKSKNLHAERRRRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-51bHLH family protein