PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0025851

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 97aa MW: 11483.3 Da PI: 11.2371

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0025851	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	4.7e-07	8	30	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s K +Ka++L +AveY+k+Lq RcHm_v2.0_Chr5g0025851 8 PNSNKTDKASMLDEAVEYLKQLQ 30 36789*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence
MLIWCLIPNS NKTDKASMLD EAVEYLKQLQ LQVQREERKK QKKGEKGRNR RRGRREGQKR 60 QGNPKDEKNC STSQIQGIQR KRKLHISLFM IRSGYLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	4e-13	bHLH family protein