PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0026191

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 180aa MW: 19914.6 Da PI: 8.1547

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0026191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9.4e-46	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq+ RcHm_v2.0_Chr5g0026191 14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQI 100 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 + l+++la +++e RcHm_v2.0_Chr5g0026191 101 DVLQTQLAIAQAE 113 ******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MKEISGRKQG GMSPCAACKL LRRRCAQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60 ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLAIA QAEVVHMKMN 120 QLPSASSPAA TSENTSPISV KQIMPNNNNN SHHHYHPHQT TKSFFTMDMV VDQANSLWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-70	LBD family protein