PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0031811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bZIP

Protein Properties

Length: 358aa MW: 40146.3 Da PI: 6.8622

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0031811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.4e-11	213	258	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ RcHm_v2.0_Chr5g0031811 213 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSALSPRVA 258 899**********************************999987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MAQLPPKIPS MTQNWAPFPH HRIMPSMANF LPSSAAVNHP PSPPHNHQQQ QQQQSSSCWM 60 DEFLDFSSAR RGAHRRSSSD SIAFLESPLN VLDEECGRNP TVHGANNIGA SFDRLDDEQL 120 MSMFSDDVAV PPTVTSSSNP STPSDQNSNN DEIHENVNNN NVNHRPLMHL TIDGQQQQQQ 180 PKSEPGEGES ECDPSDPHSQ SHAPLPTSPA DPKRVKRILA NRQSAQRSRV RKLQYISELE 240 RSVTSLQSEV SALSPRVAFL DHQRLILNVD NSALKQRIAA LAQDKLFKDA HQEALKKEIE 300 RLRQVYHHQT LKKMGNNGNN NNQNSAAAPP QQQQQAHHHN PADIMLCTDH KEQQQIMN

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MAQLPPKIPS MTQNWAPFPH HRIMPSMANF LPSSAAVNHP PSPPHNHQQQ QQQQSSSCWM  60
DEFLDFSSAR RGAHRRSSSD SIAFLESPLN VLDEECGRNP TVHGANNIGA SFDRLDDEQL  120
MSMFSDDVAV PPTVTSSSNP STPSDQNSNN DEIHENVNNN NVNHRPLMHL TIDGQQQQQQ  180
PKSEPGEGES ECDPSDPHSQ SHAPLPTSPA DPKRVKRILA NRQSAQRSRV RKLQYISELE  240
RSVTSLQSEV SALSPRVAFL DHQRLILNVD NSALKQRIAA LAQDKLFKDA HQEALKKEIE  300
RLRQVYHHQT LKKMGNNGNN NNQNSAAAPP QQQQQAHHHN PADIMLCTDH KEQQQIMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-60	bZIP family protein