PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0031921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 381aa MW: 41864.2 Da PI: 8.1771

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0031921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.1	1.1e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ ++ n p +e LA+k +++ +qV +WFqNrR+ RcHm_v2.0_Chr5g0031921 13 RFNQTEVAEMETILHQhnNTMPARELLVALAEKFsetaerkgkfQVQMKQVWNWFQNRRYAI 74 58999999999998865588999999*********************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGRPPSNGGP SFRFNQTEVA EMETILHQHN NTMPARELLV ALAEKFSETA ERKGKFQVQM 60 KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM MPRVDSTPVR TVPQGPQPIA APIHAPSVPS 120 SARGASENPI LEFEAKSGRD AAWYDVANFL SHRHLESGDP DVLVRFAGFG PEEDEWVNVR 180 KHVRQRSLPC ESSECVAVLP GDLILCFQEG KEQALYFDAN VLDAQRRRHD VRGCRCRFLV 240 RYVHDQSEEI VPLRKVCRRP ETDYRLHQLH AENNTTAAEQ KSMDHFKVPA TSAEMIQKQQ 300 NADAAFASPV FHANASFAPQ ASTPELRKPE MSIVLSAGNT CGPSGSAGVT SGSATSCAVL 360 TSCTATVLPH GGSVGNIPGG N

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGRPPSNGGP SFRFNQTEVA EMETILHQHN NTMPARELLV ALAEKFSETA ERKGKFQVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM MPRVDSTPVR TVPQGPQPIA APIHAPSVPS  120
SARGASENPI LEFEAKSGRD AAWYDVANFL SHRHLESGDP DVLVRFAGFG PEEDEWVNVR  180
KHVRQRSLPC ESSECVAVLP GDLILCFQEG KEQALYFDAN VLDAQRRRHD VRGCRCRFLV  240
RYVHDQSEEI VPLRKVCRRP ETDYRLHQLH AENNTTAAEQ KSMDHFKVPA TSAEMIQKQQ  300
NADAAFASPV FHANASFAPQ ASTPELRKPE MSIVLSAGNT CGPSGSAGVT SGSATSCAVL  360
TSCTATVLPH GGSVGNIPGG N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	1e-128	HB-other family protein