PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0032341
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 171aa    MW: 19626.3 Da    PI: 8.4884
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0032341genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.59.4e-181669356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            k+ ++t++q++ Le+ F +++++  +++  LAk+lg++ rqV +W+qN+Ra++k
  RcHm_v2.0_Chr5g0032341 16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWK 69
                            56679************************************************9 PP
2HD-ZIP_I/II106.22.5e-3416107293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kk+rl+++qvklLE+sF++++kLep+rK  la++Lg+ +rqva+W+qn+RAR+kt+ lE  y+a++ ++++  +e+++Lek+ve+L+
  RcHm_v2.0_Chr5g0032341  16 KKKRLTQDQVKLLERSFSSDNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWKTQSLELGYNAIQVQLETALAEKRKLEKDVERLK 102
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                              el++
  RcHm_v2.0_Chr5g0032341 103 GELNR 107
                             99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MDFFQTPSNK NQFHHKKKRL TQDQVKLLER SFSSDNKLEP DRKLLLAKQL GIPARQVAIW  60
YQNKRARWKT QSLELGYNAI QVQLETALAE KRKLEKDVER LKGELNRAHE LLLDLNNQRQ  120
VGGDNHPVVC SVFSASCDQE GAASSSLQLG DHVVNHEVKE FEELYACLIG M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-37HD-ZIP family protein