PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0032661

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 360aa MW: 40488.3 Da PI: 8.1316

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0032661	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.5	3.7e-55	23	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+deel+++yL kkv ++++++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatg RcHm_v2.0_Chr5g0032661 23 LPPGFRFHPSDEELISYYLLKKVMDSNFTC-RAIAEVDLNKCEPWQLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATG 108 79*************************9.89***********99999****************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 kd+e++s+ + +l g+kktLvfy+grapkg+k++Wvmheyrle RcHm_v2.0_Chr5g0032661 109 KDREIYSSkTCSLLGMKKTLVFYRGRAPKGVKSNWVMHEYRLE 151 **97455679*************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDLMNLGRHL DQLNGVHLHD NQLPPGFRFH PSDEELISYY LLKKVMDSNF TCRAIAEVDL 60 NKCEPWQLPE KAKMGEKEWY FFSLRDRKYP TGLRTNRATE AGYWKATGKD REIYSSKTCS 120 LLGMKKTLVF YRGRAPKGVK SNWVMHEYRL EGRFAYNYLP RNSQEEWVIS RVFQKAKKSN 180 GPESKKTRMI GSSGYPAEPS SPSSSSVSLP PLFDSSPYYP TVPFSNGNGS LTDRDSCSHD 240 NRTPREHVSC FSTNSDSANT GTFNHLMTSL DLAPPPQPQT SLHLSGGFGG LSDFPSLRSL 300 QENLHLPFFF PQGLQPHQPY SGAGGSFDLG DWSSLGNWRG AAAEEPRAVG PTEADCMWTY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDLMNLGRHL DQLNGVHLHD NQLPPGFRFH PSDEELISYY LLKKVMDSNF TCRAIAEVDL  60
NKCEPWQLPE KAKMGEKEWY FFSLRDRKYP TGLRTNRATE AGYWKATGKD REIYSSKTCS  120
LLGMKKTLVF YRGRAPKGVK SNWVMHEYRL EGRFAYNYLP RNSQEEWVIS RVFQKAKKSN  180
GPESKKTRMI GSSGYPAEPS SPSSSSVSLP PLFDSSPYYP TVPFSNGNGS LTDRDSCSHD  240
NRTPREHVSC FSTNSDSANT GTFNHLMTSL DLAPPPQPQT SLHLSGGFGG LSDFPSLRSL  300
QENLHLPFFF PQGLQPHQPY SGAGGSFDLG DWSSLGNWRG AAAEEPRAVG PTEADCMWTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	3e-97	NAC family protein