PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0032721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 250aa    MW: 26414.4 Da    PI: 10.6376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0032721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202474256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a+++++g+
  RcHm_v2.0_Chr5g0032721 24 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAAREYRGA 74
                            59*******.**********8...557**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MAPKTAAKSG SGTQNPKPNS LEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA  60
ARAYDKAARE YRGAKAKTNF PTPAELHANT NNRGNNNSGG RQNHHSPPAA QARSPSQTST  120
VDSSSPPAQA PPALDLTLAA PRFAGANAGY FTAASAYHAL PLGRPIFFFD AFARTDNVVT  180
TTTTGLHRPL AAREMGKLDK SVKAAASPSG GSLSGLSDSD SSTVVDFAHS PAKKGPLDLD  240
LNLPPPPEKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-26ERF family protein