PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0032861

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 195aa MW: 21464.6 Da PI: 9.1014

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0032861	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	73	148	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C adl +ak yhrrhkvCe+hska+ v+vsg +qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++ RcHm_v2.0_Chr5g0032861 73 CQADRCGADLGDAKIYHRRHKVCEFHSKAAIVVVSGARQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKSS 148 **************************************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MERQTWKEKM LNKNADEVED DSDEDETCGH GSGLISIRFE ENEKHKVKAA GSTGKKSGSS 60 SGGGGGASSA PSCQADRCGA DLGDAKIYHR RHKVCEFHSK AAIVVVSGAR QRFCQQCSRF 120 HELAEFDEAK RSCRRRLAGH NERRRKSSGE PYGEGSSRRG ISHQYRSEST QATTKYHMTS 180 PAPGNTANSK HFQIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	6e-50	SBP family protein