PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0034821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 342aa MW: 38395.1 Da PI: 8.5858

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0034821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.4	1.4e-53	18	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg RcHm_v2.0_Chr5g0034821 18 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWQLPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATG 103 79**************************.88***********988899***************************** PP NAM 88 kdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+vls+ ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl RcHm_v2.0_Chr5g0034821 104 TDKPVLSTtdeggrGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 150 ***98888877778*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MESTDSSFGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPVAII AEVDLYKFDP 60 WQLPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS TTDEGGRGTR 120 KVGVKKALVF YRGKPPKGIK TNWIMHEYRL ADNNTSNKPP GCHGLGNKKN SLRLDDWVLC 180 RIYKKNNTHR PMDQEDPMED MMGSSFQLSK LHHLPPKSTT STYSQFMDND HNLFDWMVSH 240 EGINSSTASF LPNAALANSS LPLKRGLPSL YWNDQEDEAG PSRRLQLDNS DSTGNGSIAT 300 LLSQLPQTPP PLHQQPMLGS QLGGDGLFRD TQYQLPGMNW YS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MESTDSSFGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPVAII AEVDLYKFDP  60
WQLPEKATFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS TTDEGGRGTR  120
KVGVKKALVF YRGKPPKGIK TNWIMHEYRL ADNNTSNKPP GCHGLGNKKN SLRLDDWVLC  180
RIYKKNNTHR PMDQEDPMED MMGSSFQLSK LHHLPPKSTT STYSQFMDND HNLFDWMVSH  240
EGINSSTASF LPNAALANSS LPLKRGLPSL YWNDQEDEAG PSRRLQLDNS DSTGNGSIAT  300
LLSQLPQTPP PLHQQPMLGS QLGGDGLFRD TQYQLPGMNW YS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-106	NAC family protein