PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0039751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 218aa    MW: 25480.3 Da    PI: 5.2395
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0039751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.3e-131663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W + Ed++ +d+vk++G g W +  r+ g++R++k++++rw +yl
  RcHm_v2.0_Chr5g0039751 16 KGAWAASEDQIVKDYVKKHGIGKWGKLTRETGLKRCGKSVRLRWMNYL 63
                            799*******************************************97 PP
2Myb_DNA-binding49.31.1e-1573113547
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr5g0039751  73 KEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNST 113
                             689***************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MRRSSTYYDK NDGLKKGAWA ASEDQIVKDY VKKHGIGKWG KLTRETGLKR CGKSVRLRWM  60
NYLRPDIIRG YIKEDEEELI IRLHKLLGNR WSLIAGRIPG RTDNEIKNYW NSTLKRKLEQ  120
ENHLEVFKDE EIKEDLPSSV AAADEENPRL TKNNVVEDED HHRQHYDVDV GVGVGVEATN  180
NNGIGDDEYL RDDLWWNNFI VDFNDTQLDV SDFQTDFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-51MYB family protein