PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0040281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 221aa    MW: 24781.9 Da    PI: 9.8492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0040281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-103679144
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                            +g+WT+ Ed++  ++v + G g+W+++    g++R++k+c++rw
  RcHm_v2.0_Chr5g0040281 36 KGPWTAVEDQIPMEYVSKQGEGNWNSVQWNSGLKRCGKSCRLRW 79
                            79****************************************** PP
2Myb_DNA-binding26.51.5e-0890129146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                             +g++T+eE+ l++++++++G+         mg  g++++++k++w++
  RcHm_v2.0_Chr5g0040281  90 KGAFTPEEERLILELHAKYGNM-------QMGtHGLSDNEIKNYWNT 129
                             799*****************77.......99999***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MAHNGINNIN GTAMYGEGNS ELSCVFMEGN NMGLKKGPWT AVEDQIPMEY VSKQGEGNWN  60
SVQWNSGLKR CGKSCRLRWW ANHLRPNLKK GAFTPEEERL ILELHAKYGN MQMGTHGLSD  120
NEIKNYWNTR VKKRLRKGLS LYPHDINPSK RVCQSHSHSQ QNAISIPTGV TQLSTTTVPQ  180
TDTSFSFQLQ ASSSQNKTQL PTLPSQNHPN STLNISFPPS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RVKKRLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-53MYB family protein