PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0043531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 192aa    MW: 21655.4 Da    PI: 6.6562
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0043531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.24e-11106188164
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCka 64 
                             kfY+ Y++ +GFs+rk+++ k  r++ +++r++vCsk+gk+  ++kk                   +++  r +  +r+gC a
  RcHm_v2.0_Chr5g0043531 106 KFYHLYSRVIGFSTRKDRKVKAYRSEFVIRREWVCSKQGKAMINTKKqglkekgktliqaekkkmkRNQCPRGKRYSRVGCMA 188
                             6****************************************999999899888887776665444333333455566666666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MENNEGGVCY TDHLYHSSFP SDEEVSDDDG LLQIGEDEEG FFCDGGEKGL GHTSEIGNDK  60
CHLMDMETLD GTNVGGCVDL NGKDYSNLNM DDMKDVVFSS VCEAEKFYHL YSRVIGFSTR  120
KDRKVKAYRS EFVIRREWVC SKQGKAMINT KKQGLKEKGK TLIQAEKKKM KRNQCPRGKR  180
YSRVGCMAGF GI