PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0044241

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 320aa MW: 36117 Da PI: 8.4922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0044241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ RcHm_v2.0_Chr5g0044241 161 FACSICSKTFNRYNNMQMHM 180 78*****************9 PP
2	zf-C2H2	16	3.4e-05	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ RcHm_v2.0_Chr5g0044241 245 FMCRKCGKTFAVKGDWRTHEKNC 267 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MGLWNNQHQV EDYRNLCVQA APPFIEWLKP SASSSFASSL SSSSLTSFCS LDDQNSSTLQ 60 CLPLLSRFTD TKPVKREDIG VQREGFGVKE EQIEKVTVAL HIGLPNSTTA DDEKKVLDDV 120 KEEDVVLPIT KNRFNANGCS ATESRFWIPT PAQILVGPMQ FACSICSKTF NRYNNMQMHM 180 WGHGSEFRKG PDSLKGTQPA AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHYKRKH 240 GAKPFMCRKC GKTFAVKGDW RTHEKNCGKL WYCSCGSDFK HKRSLKDHIR SFGKGHSPRP 300 CVDGFHEDDQ KECITGSEDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-111	C2H2 family protein