PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0044741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 158aa MW: 17478.5 Da PI: 4.8592

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0044741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	48.5	2.1e-15	4	99	6	95
NF-YB 6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP + v r++k l + +k + k+a e + fi ++++ a+d c+ kr+tingdd+l al ++ f ++veplk+ l+ RcHm_v2.0_Chr5g0044741 4 AELPKTIVRRVVKDKLSECSKgdgdlnVHKEALTAFSESARIFIHYLSATANDICKGSKRQTINGDDVLKALEDIEFPEFVEPLKASLE 92 578888999999999987665444444789999999*************************************************** PP NF-YB 89 kyreleg 95 re ++ RcHm_v2.0_Chr5g0044741 93 GLREKNA 99 *9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
METAELPKTI VRRVVKDKLS ECSKGDGDLN VHKEALTAFS ESARIFIHYL SATANDICKG 60 SKRQTINGDD VLKALEDIEF PEFVEPLKAS LEGLREKNAG KKAGTSKAKE AKTKEAKTKE 120 VKKKRKLEEP PPKEEEEEEE ENQDEDGGDG ASESSSKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	8e-40	NF-YB family protein