PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0045241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24902.4 Da    PI: 9.6948
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0045241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.5e-184441251
                            HHHHHH.HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF 12 tfskRr.ngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            tf +Rr +++ KKA+ELS+LC+aevavi f s+gkl+eyss
  RcHm_v2.0_Chr5g0045241  4 TFGRRRhATLVKKAQELSILCAAEVAVIAFTSDGKLHEYSS 44
                            666665269******************************96 PP
2K-box37.21.2e-1380170797
                   K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                             +++ee++ +s+++ l  Lk +   L+  + +++G+ L+ Ls +eL  Leqq + +l ++ +kK+ell++ +++++ +e+++ +e+++
  RcHm_v2.0_Chr5g0045241  80 TAAEEKDPKSSDKVLHALKGQHAALKLDKQRRMGKALDGLSREELYALEQQQKWALVSVMKKKEELLVRLLHRSKAREQQAIQEKEN 166
                             447788899999999***********999********************************************************** PP

                   K-box  94 Lrkk 97 
                             Lr+ 
  RcHm_v2.0_Chr5g0045241 167 LRRG 170
                             *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MTETFGRRRH ATLVKKAQEL SILCAAEVAV IAFTSDGKLH EYSSTSSVEH TLSRYKNNKG  60
GQVLPTKVES DPPKECRRET AAEEKDPKSS DKVLHALKGQ HAALKLDKQR RMGKALDGLS  120
REELYALEQQ QKWALVSVMK KKEELLVRLL HRSKAREQQA IQEKENLRRG YEVRTTEKPY  180
LQLFPENSTS FCTSSKAVSL SNCPTENMDI SLHLGLSYNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-27MIKC_MADS family protein