PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0045961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 282aa    MW: 32613.4 Da    PI: 4.8225
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0045961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.4e-2281411128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 
                             lp+G+rF Ptd+el+++yL+ +++  +   +++++++ + y + ePw   +       k  ++e+ +yfF++r++ ++t kr  r++
  RcHm_v2.0_Chr5g0045961   8 LPVGVRFLPTDQELLDYYLRTRIAMGDQFRTDFVADCpHFYgDKEPWVVWQiygggesKKVEDENTLYFFTHRRRLSPTAKRFDRKV 94 
                             799*******************98888555589999966662469**99644677764222355678******************** PP

                     NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              sg+W+ + + +ev + +g ++glk+ + +  g   ++++  W+m+e++l
  RcHm_v2.0_Chr5g0045961  95 GSGTWSGQYS-REVED-DGVVIGLKRDFRYE-GGCDESHNDAWLMQEFQL 141
                             *****98765.99999.9***********97.66666689********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MAILSNKLPV GVRFLPTDQE LLDYYLRTRI AMGDQFRTDF VADCPHFYGD KEPWVVWQIY  60
GGGESKKVED ENTLYFFTHR RRLSPTAKRF DRKVGSGTWS GQYSREVEDD GVVIGLKRDF  120
RYEGGCDESH NDAWLMQEFQ LDDDSDLVLC SLRKNPRKGS NTRVVNDRKR KSIPQPRKPK  180
SKRQKNGGTC HQEQGSSTVH PNYELPYPQM DVHPNYELPY PQMDDLDFSF PEIYPDLFVD  240
DGRDLLTMDE LLGETPVWEE GNNFNLGEEG NNFNLVTGVP LL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170184RKSIPQPRKPKSKRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.15e-15NAC family protein