PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0046601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 258aa    MW: 29554.8 Da    PI: 7.0611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0046601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.24.2e-4661372128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                             + GfrF Pt+eelv++yL +k+e+k+  ++ +vi+++diy++ePw+Lpk     +++++++w+fF++r++++ +g r+nr+t+sgyW
  RcHm_v2.0_Chr5g0046601   6 TTGFRFYPTEEELVSFYLLNKLESKHqDSIRRVIPDLDIYSIEPWELPKyaaeLCREDTEQWFFFTPRQQREVQGGRPNRTTASGYW 92 
                             68*********************9994555677***************645543344667*************************** PP

                     NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             katg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  RcHm_v2.0_Chr5g0046601  93 KATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 137
                             *******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MDQALTTGFR FYPTEEELVS FYLLNKLESK HQDSIRRVIP DLDIYSIEPW ELPKYAAELC  60
REDTEQWFFF TPRQQREVQG GRPNRTTASG YWKATGSPGY VYSSDNRVIG VKKTMVFYKG  120
KAPTGRKTKW KMNEYRAIEE TAAPSATTSN SASTAIIPKL RHEFRLCRVY IVSGSSRAFD  180
RRPLEGSRDT SHRRSDLTRA SASSSHQAAM VEEKTSSSSD THSNSGDLAD FQAGNNNDWE  240
MNDDLQQPLW EWEQLILL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-86NAC family protein