PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0046631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 256aa    MW: 28936 Da    PI: 6.9502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0046631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.72.9e-4671373128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              GfrF Pt+eelv++yL +k+e+k+  ++ +vi+++diy++ePw+Lp+     +++++++w+fF++r++++a+g r+nr+t+sgyWk
  RcHm_v2.0_Chr5g0046631   7 TGFRFYPTEEELVSFYLLNKLESKHqDSIRRVIPDLDIYSTEPWELPNyaaeLCRGDTEQWFFFTPRQQREAQGGRPNRTTASGYWK 93 
                             7*********************9994555677***************645543344777**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             atg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  RcHm_v2.0_Chr5g0046631  94 ATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 137
                             ******************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MDQAPTTGFR FYPTEEELVS FYLLNKLESK HQDSIRRVIP DLDIYSTEPW ELPNYAAELC  60
RGDTEQWFFF TPRQQREAQG GRPNRTTASG YWKATGSPGY VYSSDNRVIG VKKTMVFYKG  120
KAPTGRKTKW KMNEYRAIDE TAAPSATTSN SASTAIIPKL RHEFRLCRVY IVSGSSRAFD  180
RRPPEGSGYA SHRRSNLTGA SASSSHQAAM VAEKTSSSSD TRSNSGDQAD FQAENNDLEM  240
DDDLQPLWEW EQLNLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-91NAC family protein