PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0047081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 69aa    MW: 7871.97 Da    PI: 4.3179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0047081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.6e-181763148
                     NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                            + pGfrF+Ptdeel+++yLk+k+e  + ++ evi+evdi+++ePwdLp
  RcHm_v2.0_Chr5g0047081 17 MFPGFRFSPTDEELISHYLKNKLEYPEKSV-EVISEVDICNFEPWDLP 63
                            579************************998.99**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    
MSGISKEAQL SIAASSMFPG FRFSPTDEEL ISHYLKNKLE YPEKSVEVIS EVDICNFEPW  60
DLPGLFVRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-23NAC family protein