PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0048841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 222aa    MW: 25575.6 Da    PI: 8.328
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0048841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.72.3e-2381411128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 
                             lp+G+rFhPtd+el+++yL+ +++  ++  +++++++ + y   ePw   +       k  ++ek +yfF++r++ ++t kr  r++
  RcHm_v2.0_Chr5g0048841   8 LPVGVRFHPTDHELLDYYLRTRIAMGDHFHSDFVADCpHFYGDnEPWVVWQiygggesKKVEDEKTLYFFTHRRRLSPTTKRFDRKV 94 
                             799*******************99999777799999966664349**99644677764322356688******************** PP

                     NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              sg+W+ + + +ev + +g ++glk+ + +  g +++ ++  W+m+e++l
  RcHm_v2.0_Chr5g0048841  95 GSGTWSGQNS-REVED-DGVVIGLKREFRYEGGCDSR-HNDAWLMQEFQL 141
                             *****98755.99999.9***********98665555.899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MAIRSSGLPV GVRFHPTDHE LLDYYLRTRI AMGDHFHSDF VADCPHFYGD NEPWVVWQIY  60
GGGESKKVED EKTLYFFTHR RRLSPTTKRF DRKVGSGTWS GQNSREVEDD GVVIGLKREF  120
RYEGGCDSRH NDAWLMQEFQ LINDDSDFVL CTLRKNPRKA PPTPTAQGSN VVENTRVNDK  180
KRKSIVDQPR KPKSKKQKKE ESCHQEQEGS SIVDQMKVGE AN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180199KKRKSIVDQPRKPKSKKQKK
2182197RKSIVDQPRKPKSKKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.14e-18NAC family protein