PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0048911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 259aa MW: 30277 Da PI: 6.2889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0048911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.5	2.8e-15	8	102	1	86
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 lp+G+rF Ptd+el++++L+ +++ ++ +++++++ ++v ePw + k ++ek +yfF++r++ ++t kr r++ RcHm_v2.0_Chr5g0048911 8 LPVGVRFLPTDHELLDYFLRTRIAMGDHFHSDFVADCPHFYVdnEPWVVWQihgggesKKVEDEKTIYFFTHRRRLSPTAKRFDRKV 94 799******************99999777799999954443349999644567764322356688****************** PP NAM 79 ksgyWkat 86 sg+W+ RcHm_v2.0_Chr5g0048911 95 GSGTWSRH 102 ***975 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MAILSNKLPV GVRFLPTDHE LLDYFLRTRI AMGDHFHSDF VADCPHFYVD NEPWVVWQIH 60 GGGESKKVED EKTIYFFTHR RRLSPTAKRF DRKVGSGTWS RHLERDFRYE GGCDSRHNEA 120 WLMQEFQLID DHSDFVLCSL RKNPRKAPPT PTAQGSNVVE NTRVVNDKKR KSIVDQPRKP 180 KSKKQKKEGS CHQEEGSSTL HPNYELPYPQ MDDLDFYFPE IYPELFVDDE RDLFTMDELL 240 GQSWEEGNNF NLVTGVPLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	187	KKRKSIVDQPRKPKSKKQKK
2	170	185	RKSIVDQPRKPKSKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	2e-14	NAC family protein