PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0050681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 508aa MW: 57283.3 Da PI: 6.6865

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0050681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.2e-20	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql++Le+++++++yp++e++ +LA++lgL+e+q++ WF+ rR k+k+ RcHm_v2.0_Chr5g0050681 19 KKRVLKTPAQLTALEKFYNEHKYPTEEMKSQLAEELGLSEKQISGWFCHRRLKDKR 74 89****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEESNEVHSE ENKTSFDNKK RVLKTPAQLT ALEKFYNEHK YPTEEMKSQL AEELGLSEKQ 60 ISGWFCHRRL KDKRLSRDET YANGRQDRSS GVIQDRASGL GQDSCGSTKH GDYRYVDPRE 120 VESRRLSGYD FPPADLTREH RIHYTERVSM DNTSSESSSS LQDRFLTQTE DPYDMETSRY 180 ITDNGVFSPL NTKGAENMGY KPSGYLKVKG EIENAAITAV KRQLGRHFRE DGPPLGVEFD 240 PLPPGAFESP IMDPVQEPSI GGDAAGLDSP DTSGVKRQPS PSTRYEVYNS KLSSQGLYMH 300 QENRGIMHGV DMVERKSRKQ LRQKSTYLKD INSSAGKNSS LDMYDAFPGG MSAYNGNRKN 360 RMSSKHGHRG RKITSETTEP WSNESDKVCS PNIGQRSDYF KSKALNSVVK HSETHDTERG 420 LFTMIPREEK VDGECKAVKD YHNPLRVTMT DEVAVGKQGR VNFPHQDYAT SVPFSQIPER 480 KNQIKGTAME MPSSFSEDET AETNSSVD

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEESNEVHSE ENKTSFDNKK RVLKTPAQLT ALEKFYNEHK YPTEEMKSQL AEELGLSEKQ  60
ISGWFCHRRL KDKRLSRDET YANGRQDRSS GVIQDRASGL GQDSCGSTKH GDYRYVDPRE  120
VESRRLSGYD FPPADLTREH RIHYTERVSM DNTSSESSSS LQDRFLTQTE DPYDMETSRY  180
ITDNGVFSPL NTKGAENMGY KPSGYLKVKG EIENAAITAV KRQLGRHFRE DGPPLGVEFD  240
PLPPGAFESP IMDPVQEPSI GGDAAGLDSP DTSGVKRQPS PSTRYEVYNS KLSSQGLYMH  300
QENRGIMHGV DMVERKSRKQ LRQKSTYLKD INSSAGKNSS LDMYDAFPGG MSAYNGNRKN  360
RMSSKHGHRG RKITSETTEP WSNESDKVCS PNIGQRSDYF KSKALNSVVK HSETHDTERG  420
LFTMIPREEK VDGECKAVKD YHNPLRVTMT DEVAVGKQGR VNFPHQDYAT SVPFSQIPER  480
KNQIKGTAME MPSSFSEDET AETNSSVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-87	HB-other family protein