PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0052231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 346aa    MW: 37597.1 Da    PI: 8.7018
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0052231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32171227158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  RcHm_v2.0_Chr5g0052231 171 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGTGGRF 227
                             69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MQPKSDTENR IPADRHTIPP STVSSEPWWR TVGYNPTSPA VAGINASNSS SFERPKSRSE  60
SSDDKSVSDD GSNEDDDNAT KKSQMTSPQS VGNKNQDLQL VSSTVPTVHD EDVAQPPQLE  120
LIGHSIACAS NPYQDPYYAG MMAAYGHQPL GYPPFVGVPH ARMPLPLEMA QEPVYVNAKQ  180
YQGILRRRQA RAKAELEKKL IKVRKPYLHE SRHQHAMRRA RGTGGRFARK TIGDTSKTTG  240
QEKASSSGPA HSSQSASSSG SEPLPSDSAE TWNSSTSQLE ASRPVHDAYA TNNYVNGSGC  300
YQTHGGLQAS LYRSYSGKRG DEGDCTGQER GSMSSNQGSQ RRLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-64NF-YA family protein