PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0053481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 188aa    MW: 20328.8 Da    PI: 5.3203
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0053481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.73e-52297196
                   NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89
                            vreqd+++Pianv+rim+++lP +akis+daketvqecvse+isf+t+ea+++cqre+rkt++++d+lwa+++lGf++y+epl+++l+k
  RcHm_v2.0_Chr5g0053481  2 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMSKLGFDNYIEPLSLFLSK 90
                            69*************************************************************************************** PP

                   NF-YB 90 yrelege 96
                            yre+eg 
  RcHm_v2.0_Chr5g0053481 91 YREAEGT 97
                            ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MVREQDQYMP IANVIRIMRR ILPPHAKISD DAKETVQECV SEYISFITGE ANERCQREQR  60
KTVTAEDVLW AMSKLGFDNY IEPLSLFLSK YREAEGTERS SSLFAKCERG DGGMVEYAPV  120
LGHYGPPGFG LAAQQPGMYK AGAMSGYYIG GAGGSGNEGG GAGSSSASQQ RQGQSAMGGG  180
FDPFAQFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-62NF-YB family protein