PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0055331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 205aa    MW: 21821.8 Da    PI: 4.6575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0055331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-05178201123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             ++C+ C+ksF +   L++H +  H
  RcHm_v2.0_Chr5g0055331 178 FSCGSCSKSFGSDGALQSHNKAkH 201
                             89*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MLSLLPRNRM MFESESSEEE LPMIAAENGK VENAKPAIAK SNAVKPESSG KQKVKIEEPI  60
KVEADEDDSA SDMDDSDDLL DEDDSSEDDD DESEDDSDEE DEETPTPKKP ESKKRAQVSG  120
SVKTPVSAKK AKIVASTPQK TDGKKGGHTD TPHPAKKGKT PATDKSKTQT PKSAGGNFSC  180
GSCSKSFGSD GALQSHNKAK HSAGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-09C2H2 family protein