PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0055971
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 250aa    MW: 28917.5 Da    PI: 7.6509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0055971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-055074123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                            ++C+   Cg +F+  s+L++H ++H
  RcHm_v2.0_Chr5g0055971 50 HVCQepGCGNVFKFASELRKHENSH 74
                            689999****************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MVAELIGLWW CWFGLDSCFF LAGPGNVKRH AVEFHSEDCP STSDEGQKQH VCQEPGCGNV  60
FKFASELRKH ENSHDSVKAF CSEPDCMRYF SNKQCFKDHI QSCHTHITCE ICGKERKKNI  120
KSHLRTHEDG GRSSLEVKCD YKARKSNLLQ HVKAVHLQQK SFACSFSGCG KTFSYKHVRD  180
KHEKSGYHVY AYGDFEEADE QFRSRPRGGR KRKCLTVEML VRKRVTPPDQ FGPETEFLSQ  240
FFSQEEEDEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205213RPRGGRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-75C2H2 family protein