PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0056621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 395aa MW: 44222.1 Da PI: 8.8637

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0056621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.3e-07	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H RcHm_v2.0_Chr5g0056621 223 HYCQVCGKGFKRDANLRMHMRAH 245 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MNINPGATPN CFQGMYSMTG QDTVSSFSLE PDSSSSGTVL PQDQNYSTSL LYSLSVLKEK 60 VRQAKSLVGV LIAPPDHHQS QQQQLPESTT MGTVASMNNV IQEIIVTASS MMFTCQQMAL 120 VAPGNDTRSE PNFSISTAGR SNIRDATFYP TNDQTLDWFS TENYNNCPTR DMIGRSHGQV 180 ETKEFPQRVE TNNALQVQNL PPKNSSYDII ELDAADLLAK YTHYCQVCGK GFKRDANLRM 240 HMRAHGDEYK TSIALSNPLK NNNKQNSAVN IHGSSDAECS VKLPRKYSCP QEGCRWNQKH 300 AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD LRTHEKHCGD LRWQCSCGTT 360 FSRKDKLMGH VALFVGHTPV ILSSNLPIRH GKAVN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MNINPGATPN CFQGMYSMTG QDTVSSFSLE PDSSSSGTVL PQDQNYSTSL LYSLSVLKEK  60
VRQAKSLVGV LIAPPDHHQS QQQQLPESTT MGTVASMNNV IQEIIVTASS MMFTCQQMAL  120
VAPGNDTRSE PNFSISTAGR SNIRDATFYP TNDQTLDWFS TENYNNCPTR DMIGRSHGQV  180
ETKEFPQRVE TNNALQVQNL PPKNSSYDII ELDAADLLAK YTHYCQVCGK GFKRDANLRM  240
HMRAHGDEYK TSIALSNPLK NNNKQNSAVN IHGSSDAECS VKLPRKYSCP QEGCRWNQKH  300
AKFQPLKSMI CVKNHYKRSH CPKMYVCKRC NRKQFSVLSD LRTHEKHCGD LRWQCSCGTT  360
FSRKDKLMGH VALFVGHTPV ILSSNLPIRH GKAVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-104	C2H2 family protein