PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0056721

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 392aa MW: 45461.2 Da PI: 4.4248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0056721	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	73.8	4.1e-23	6	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr 76 l pG rF P ++el+ +yLk+kv+gk+++ +e i e+d+y ePw++ + + + ++k++yfF++++k +a+ +r +r RcHm_v2.0_Chr5g0056721 6 LLPGHRFCPMEDELLLYYLKPKVNGKEVPRKESlICELDLYGDqEPWKIWEgfearR--TndlrKNKDLYFFTQKKKVSAKASRISR 90 579**********************8887766**9754974355542..1334466799************** PP NAM 77 atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128 ++ sg+Wk + k+++ ++++ g kkt ++ ++r+ ++ W+m e+++ RcHm_v2.0_Chr5g0056721 91 KVGSGTWKGQVAAKNIYLLDENQkptttlLGFKKTYTYQNKRSV--HHGCWIMYEFEF 146 *************984444456666999999999855555..599****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MEDHMLLPGH RFCPMEDELL LYYLKPKVNG KEVPRKESLI CELDLYGDQE PWKIWEGFEA 60 RRTNDLRKNK DLYFFTQKKK VSAKASRISR KVGSGTWKGQ VAAKNIYLLD ENQKPTTTLL 120 GFKKTYTYQN KRSVHHGCWI MYEFEFHKSQ LLPKKQVNKN DYVLCLLRKN DELPERKRKR 180 QQEEEMLEED YVEDGDGDND LNCDPALLLE EPHEKWQCLL PCSDNNVAAP SLEWAELEQW 240 SNQQFLQPAP PLEAGPTPLE DEPAVSLQVY EDLGVQKPVT ELQLRDENLG QQCHDIPTNT 300 ATEMMSGLDF HHDENLEQQM GDEVGVMAQG EVDVYGGNLS DVIVGKDWAK SFMEDLMNDE 360 QLNTMEDWAK SFMEDLMNDE QLNTMEVGNC IK

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MEDHMLLPGH RFCPMEDELL LYYLKPKVNG KEVPRKESLI CELDLYGDQE PWKIWEGFEA  60
RRTNDLRKNK DLYFFTQKKK VSAKASRISR KVGSGTWKGQ VAAKNIYLLD ENQKPTTTLL  120
GFKKTYTYQN KRSVHHGCWI MYEFEFHKSQ LLPKKQVNKN DYVLCLLRKN DELPERKRKR  180
QQEEEMLEED YVEDGDGDND LNCDPALLLE EPHEKWQCLL PCSDNNVAAP SLEWAELEQW  240
SNQQFLQPAP PLEAGPTPLE DEPAVSLQVY EDLGVQKPVT ELQLRDENLG QQCHDIPTNT  300
ATEMMSGLDF HHDENLEQQM GDEVGVMAQG EVDVYGGNLS DVIVGKDWAK SFMEDLMNDE  360
QLNTMEDWAK SFMEDLMNDE QLNTMEVGNC IK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	3e-16	NAC family protein