PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0057501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 376aa MW: 42522.4 Da PI: 7.8028

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0057501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl RcHm_v2.0_Chr5g0057501 14 KGPWSPEEDSKLKEYIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.4	6.6e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ RcHm_v2.0_Chr5g0057501 69 GEFSEEEDRIICTLFTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDRIIC TLFTSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLRDM 120 QTHMAPPSLT TSQSHRSNPP PFPVSSSLHQ FQNQPFHHQP LSLMHKDLNM MTYSTYTPTL 180 TSPATPGSFS SGFEIMPNIS NPLTNYSSLF QTQECLVGSM HYNHPAVKKN LNLIMFGSEG 240 SCSTSSDGSC NNNQISYESR RSGNIKQEEM GMGFQLEDPN QKFMMLNYGN SSSAAISDDH 300 HNYINNNNQW GERPNGYNGN NTRFGDYDLE DVKQLISSSS TDINININND NGSISNSLFS 360 VDENKTDHKE KVMYFY

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC TLFTSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLRDM  120
QTHMAPPSLT TSQSHRSNPP PFPVSSSLHQ FQNQPFHHQP LSLMHKDLNM MTYSTYTPTL  180
TSPATPGSFS SGFEIMPNIS NPLTNYSSLF QTQECLVGSM HYNHPAVKKN LNLIMFGSEG  240
SCSTSSDGSC NNNQISYESR RSGNIKQEEM GMGFQLEDPN QKFMMLNYGN SSSAAISDDH  300
HNYINNNNQW GERPNGYNGN NTRFGDYDLE DVKQLISSSS TDINININND NGSISNSLFS  360
VDENKTDHKE KVMYFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	KLKKKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-79	MYB family protein