PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0058731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 308aa    MW: 34743.9 Da    PI: 8.3882
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0058731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.4e-19239272134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  RcHm_v2.0_Chr5g0058731 239 CTHCAVTKTPQWREGPLGPKTLCNACGVRYRSGR 272
                             *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MTAVSADVTK LPKRESTMDA LPLDDNINQL LEHFYDDDTI KALDFPMEDI DAADEDWKTQ  60
LQGLEPYYES NFQYLSTSYE GTSGVTAITS GGRSSLQSND CFDRKHMHLI PIHSPVSVLK  120
SQSESQSSGS AQHLRTLEPN FINIRASEPS FVNPVKKKRT QCRRARPANF SNRFTFPCAS  180
SNSSVSDNFY RFETFLTEEM MNPDKRKQKK KNPSLQETGE ISETKRSMEP GESRETKRCT  240
HCAVTKTPQW REGPLGPKTL CNACGVRYRS GRLFPEYRPA ASPTFVPAVH SNSHKKVIEL  300
RNKGCQGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-43GATA family protein