PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0059711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YC

Protein Properties

Length: 194aa MW: 21594.7 Da PI: 10.7034

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0059711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.6	1.6e-14	84	176	7	99
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 e+++e+++d+k ++P+ r+k+i++a++ +is++a l+ ka e f+ +l+ + + + ++++l ++++v + + ++fl RcHm_v2.0_Chr5g0059711 84 EEEVEEKEDVKSYTFPMERVKRIIRAEDSDLRISSDAVFLVNKATEKFLEKLSEDAHKCCVKDRKKALAYKHLSSVVCKQKRYEFLS 170 5789********************999999*************************************************** PP NF-YC 94 divprd 99 d vp++ RcHm_v2.0_Chr5g0059711 171 DFVPEK 176 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MATPKKGTPP KKTKEAQKPS TKSSKNDGNK IKKKTGNGTA AAAAAVRSPS SKPQKSREQN 60 GGKSTKTPTP KSKKPQQNGK RVREEEVEEK EDVKSYTFPM ERVKRIIRAE DSDLRISSDA 120 VFLVNKATEK FLEKLSEDAH KCCVKDRKKA LAYKHLSSVV CKQKRYEFLS DFVPEKIKAG 180 DALAKRKQTQ EGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	5e-32	NF-YC family protein