PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0059771

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 497aa MW: 54555 Da PI: 8.9786

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0059771	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RcHm_v2.0_Chr5g0059771 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	11.9	0.0007	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + RcHm_v2.0_Chr5g0059771 145 WKCEKCSKKYAVQSDWKAHSKIC 167 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MMSSEDGLSV PSTISGGFLH QEPNPNPSPN PNMSNPALKR KRNLPGTPDP DAEVIALSPK 60 SLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS KLEVIRKKVY VCPEKSCVHH 120 EPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYRCDCGTLF 180 SRKDSFITHR AFCDALAAEE SARFGSTSTA TNINVPSFMN GSITNNQPHH HQQQQQQARN 240 IPHFLPIFQH QQQPEFSGSG HLSAVNLGLP EMVQTASSMD MFGPSSSQNQ WLNKFPEASF 300 TNGNLSMSSL MSTRGHKEEE DSKANLNLSG TMSSSSFYNN NQSLGHMSAT ALLQKAAQMG 360 STTSNNSDVI PAAFGFMNSS PYSHNKNDEN FNVLLNSLSP STQIGDGSSS LFSTSFLSNK 420 INHLNHMMNL PLASSSSTTT VNETEKSSLT RDFLGVGGVT GVPFFQQELG AANLASMGSA 480 MDHLTQYSSN TSGATQQ

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MMSSEDGLSV PSTISGGFLH QEPNPNPSPN PNMSNPALKR KRNLPGTPDP DAEVIALSPK  60
SLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS KLEVIRKKVY VCPEKSCVHH  120
EPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKICGTR EYRCDCGTLF  180
SRKDSFITHR AFCDALAAEE SARFGSTSTA TNINVPSFMN GSITNNQPHH HQQQQQQARN  240
IPHFLPIFQH QQQPEFSGSG HLSAVNLGLP EMVQTASSMD MFGPSSSQNQ WLNKFPEASF  300
TNGNLSMSSL MSTRGHKEEE DSKANLNLSG TMSSSSFYNN NQSLGHMSAT ALLQKAAQMG  360
STTSNNSDVI PAAFGFMNSS PYSHNKNDEN FNVLLNSLSP STQIGDGSSS LFSTSFLSNK  420
INHLNHMMNL PLASSSSTTT VNETEKSSLT RDFLGVGGVT GVPFFQQELG AANLASMGSA  480
MDHLTQYSSN TSGATQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	108	KLKQRSKLEVIRKK
2	97	110	KLKQRSKLEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein