PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0059781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 180aa    MW: 20618.7 Da    PI: 9.9686
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0059781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.7e-51151431128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhP+deel+v+yL++kv++++l++ + i+e+d+yk++Pw+Lpk++  +e+ewyfFs+r++ky++g+r+nra++sgyWka g
  RcHm_v2.0_Chr5g0059781  15 LPPGFRFHPSDEELIVHYLQRKVTSRPLPA-HLITEIDLYKYNPWELPKMALFGEDEWYFFSPRERKYPNGERPNRAAASGYWKAAG 100
                             79****************************.88***************77777999******************************* PP

                     NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk++l++   ++ +g+kk Lvfy+grap+g kt+W+m eyrl
  RcHm_v2.0_Chr5g0059781 101 SDKPILTScgISKRIGVKKALVFYTGRAPTGIKTEWIMVEYRL 143
                             *******9766677***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MEIEPTFSAS PNFQLPPGFR FHPSDEELIV HYLQRKVTSR PLPAHLITEI DLYKYNPWEL  60
PKMALFGEDE WYFFSPRERK YPNGERPNRA AASGYWKAAG SDKPILTSCG ISKRIGVKKA  120
LVFYTGRAPT GIKTEWIMVE YRLLDSTTKP SRSKGSMRVS EIFNALLRLH ICVSQKHGAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-68NAC family protein