PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0060941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 230aa    MW: 25153.3 Da    PI: 6.4042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0060941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.31.1e-42561551100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+
  RcHm_v2.0_Chr5g0060941  56 PCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 142
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             + l+a+la++++e
  RcHm_v2.0_Chr5g0060941 143 SDLQAQLAKAQAE 155
                             ********99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MECSTDTSIN TTNTTYAPST PFSHQSPSSS QSSSPPITPT QAQTQIPPPQ NVVVSPCAAC  60
KILRRRCAEK CVLAPYFPPS EPAKFTIAHR VFGASNIIKF LQDLPESQRA DAVSSMVYEA  120
SARIRDPVYG CAGAICHLQK QVSDLQAQLA KAQAEVVNMQ CQQANLVALL MEMAKPDHHE  180
QGSPDQQSLD HHNFITSPLP HSNILNQSNL SFLDDHNSAL GSFWELPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-77LBD family protein