PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0062001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 247aa    MW: 28111.9 Da    PI: 8.4828
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0062001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.6e-211776357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  RcHm_v2.0_Chr5g0062001 17 SRWCPTPEQLMILEEMYRAgVRTPNASQIQQITAQLsfygKIEGKNVFYWFQNHKARDRQ 76
                            8*****************99*************************************996 PP
2Wus_type_Homeobox120.75.9e-391577264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
  RcHm_v2.0_Chr5g0062001 15 SSSRWCPTPEQLMILEEMYRAGVRTPNASQIQQITAQLSFYGKIEGKNVFYWFQNHKARDRQK 77
                            689***********************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSPAANFSAS FSSSSSSRWC PTPEQLMILE EMYRAGVRTP NASQIQQITA QLSFYGKIEG  60
KNVFYWFQNH KARDRQKLRR KLCKQLQLQQ QQLYHNYYHC QHHHQQQLML NQQSLLGYLD  120
QSPSASSVLH QPLCCHHHNL SAGFLPQVGV EDALMNYTRK VHEIPAAAER LEMEKSVLNM  180
YGHDWMMTTK KTMDVGPPAS PACCTRSAAA ATPRPLKTLQ LFPIKSPNLR SEDHEEEEST  240
STPSNPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-34WOX family protein