PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0062941

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 174aa MW: 18970.9 Da PI: 10.0679

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0062941	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H RcHm_v2.0_Chr5g0062941 41 FVCKTCNREFSSFQALGGHRASH 63 89**********99999998887 PP
2	zf-C2H2	10.7	0.0016	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H RcHm_v2.0_Chr5g0062941 94 HECPICGLEFAIGQALGGHMRRH 116 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MKRGREDDQT LDLVSCLMLL SKVGQSDSSP IKKQKTLDRA FVCKTCNREF SSFQALGGHR 60 ASHNKPKLMA GNGASDLLQL AQSSPSSPAK PKTHECPICG LEFAIGQALG GHMRRHRDVM 120 TSAAADRVRT AAVPVPVLKK STSSKWVSCL DLDLNLAPPG YQRHYDLTKL QLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	6e-37	C2H2 family protein