PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0062951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 171aa    MW: 18780.6 Da    PI: 10.0672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0062951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000714163123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ Fs+   L  H  +H
  RcHm_v2.0_Chr5g0062951 41 FVCKTCNREFSSFQALGGHRASH 63
                            89**********99999998887 PP
2zf-C2H210.70.001693115123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp+Cg  F     L  H+r+H
  RcHm_v2.0_Chr5g0062951  93 HECPICGLEFAIGQALGGHMRRH 115
                             79*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MKRDREDEQT LDLVSCLMLL SKVGQNDSSP VKKQKTSDRA FVCKTCNREF SSFQALGGHR  60
ASHNKPKLMA GGAIDLLQLP QSTPSSPAKP KTHECPICGL EFAIGQALGG HMRRHRDVIN  120
SASADRDRAA AMPVLKKSNS SKRVSCLNLD LNLAPPGYQR HYDLTKLQLI A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-38C2H2 family protein