PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0063011

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 164aa MW: 18198.9 Da PI: 10.0672

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0063011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H RcHm_v2.0_Chr5g0063011 42 FVCKTCNREFSSFQALGGHRASH 64 89**********99999998887 PP
2	zf-C2H2	11.9	0.00068	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C + F L H+r+H RcHm_v2.0_Chr5g0063011 87 HECPICRMEFAVGQALGGHMRRH 109 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MKRGREDDQQ TLDLVNCLML LSKVDQNDSS SIKKQKISDR VFVCKTCNRE FSSFQALGGH 60 RASHKKPSGA DQLQLAQPSS PAKPKKHECP ICRMEFAVGQ ALGGHMRRHR DVMSSAAERI 120 RAAAVPVLKK SNSSKRVSCL NLDLNLAPPG YPHLYDLTEL QLTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-38	C2H2 family protein