PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 234aa    MW: 27955.4 Da    PI: 9.5418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS226.71.1e-69423175317
                    GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161
                             ++ l+a++++ +++P+  +s++ aN++I + +e+++r+HiiDf+i +G QWp L+q+La+Rp+gpp+lRiT++++            
  RcHm_v2.0_Chr5g0065721   4 ADILKAYQTYIKACPFKLMSNIYANKTIFKLTEKATRLHIIDFGILYGYQWPGLIQSLAKRPSGPPMLRITVLKR------------ 78 
                             67899**********************************************************************............ PP

                    GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                              +rLak++++++ pfe+n+ +a+++e++++++++++++E ++Vn+  +l +l+ e+++++s+rd+vLkl+++++P++ ++   +  +
  RcHm_v2.0_Chr5g0065721  79 -HRLAKYCKRFNGPFEYNF-IAQDWETIRYQDIKLDRDELTVVNCLCRLRNLP-EETEMRSPRDRVLKLIRRINPDMYIHGLVNGTY 162
                             .9*****************.7*******************************9.78888899************************* PP

                    GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                             n++ F  rf eal+++s+lfd+++++lpre+++r  +E+e+lgr+i nv+aceg++r er et+++W+ 
  RcHm_v2.0_Chr5g0065721 163 NAPFFEIRFREALYHFSSLFDMFDETLPREDQQRLLYEQEILGRDIINVIACEGSRRLERPETYKQWQI 231
                             *******************************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MSAADILKAY QTYIKACPFK LMSNIYANKT IFKLTEKATR LHIIDFGILY GYQWPGLIQS  60
LAKRPSGPPM LRITVLKRHR LAKYCKRFNG PFEYNFIAQD WETIRYQDIK LDRDELTVVN  120
CLCRLRNLPE ETEMRSPRDR VLKLIRRINP DMYIHGLVNG TYNAPFFEIR FREALYHFSS  180
LFDMFDETLP REDQQRLLYE QEILGRDIIN VIACEGSRRL ERPETYKQWQ IRNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-96GRAS family protein