PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 160aa    MW: 19081.3 Da    PI: 10.1591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS116.63.2e-3611157228373
                    GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                             Lkl+k+++P+++++   +  + s+ F+ rf eal +y alfd++ea++pre+++r++  re+ g++i+nv+ac+g er+er  t++k
  RcHm_v2.0_Chr5g0065751  11 LKLIKNINPNLFIHGITNGIYISPFFAIRFKEALLHYYALFDMFEATIPREDKQRMMFKREIYGNDIMNVIACKGLERFERPDTYKK 97 
                             99************************************************************************************* PP

                    GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                             W+ r  + G+k++p +++  k++k l + ++  + +rvee+ +++++gWk+r +v++S+W
  RcHm_v2.0_Chr5g0065751  98 WQIRNVRTGLKQLPSDQERLKKVKNLSKLMGyHKDFRVEEDGHWMLQGWKGRIIVALSFW 157
                             ****************************9999999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MENSPRDVVD LKLIKNINPN LFIHGITNGI YISPFFAIRF KEALLHYYAL FDMFEATIPR  60
EDKQRMMFKR EIYGNDIMNV IACKGLERFE RPDTYKKWQI RNVRTGLKQL PSDQERLKKV  120
KNLSKLMGYH KDFRVEEDGH WMLQGWKGRI IVALSFWIPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.12e-59GRAS family protein